PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016652574.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 961aa    MW: 105568 Da    PI: 7.2233
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016652574.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-18394494199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++
  XP_016652574.1 394 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPIKIQDVKGNEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PGGR 486
                     99**************************555556667***************9989999999***9.********************887.7777 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     lv++++++
  XP_016652574.1 487 LVMGFRKA 494
                     88877765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-29390495IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-20391494IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-23392493No hitNo description
PfamPF023625.0E-16394493IPR003340B3 DNA binding domain
SMARTSM010196.4E-23394495IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941394495IPR003340B3 DNA binding domain
PROSITE profilePS5105014.674659709IPR011124Zinc finger, CW-type
PfamPF074964.3E-12664706IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MGSKICMNVL CGTTNTHEWK KGWSLRSGGF AHLCFKCGAA YEKLVYCDKF HAGESGWRDC  60
SLCRKPLHCG CIVSKSLYEC LDYGGVGCIS CAKSSQPRVI QNDDVLNGFG GLKISNYSDR  120
QSTVVQNGAF SNTVDEGKLL QLCKIMEANE SNLLPQPQRG DINVSLVQKK QEEVINHKGE  180
VSLGFSSTTQ PSIGSLTFSK SDNGRTMMED MNKSSSQPSL SMTLGSPSAT PSFVQPFPGG  240
LVDGREQSKT PSSFQQGHGR EQGTTPSFQQ GLVDGREQSK TSSSFQQGLV DGREQSKTPS  300
SFQQGLVDGR EQSKTPSSFQ QGQKSRPILP KPLKPGVTMS SETNKGGFPN VRVARPPAEG  360
RGKNQLLPRY WPRITDQELQ KLSGDLNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF  420
PPISQSEGLP IKIQDVKGNE WMFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR  480
IDPGGRLVMG FRKASKSLDM QDPQTSILPN GSTPGETSCP SVVENPATGS GHPGLFQTNT  540
GSKDPHLHAL SEHLHLTDGD MSLHRNDYHG HRTSEDLLQQ PVSNSDKKRA RNIGPKSKRL  600
LMHSEDVLEL RLTWEEAQDL LRPPPSVKPS IVTIEDHEFE EYDEPPVFGK RSLFTASSSE  660
RQEQWAQCDD CSKWRRLPAD VLLPPKWTCS ENSWDTSRRL CSAPEEMSQK DFDSLLRASK  720
DLKKRRIIEN CSETQEHEPS GLDALASAAI LGDNVVDSGE QSVGATTRHP RHRPGCTCIV  780
CIQPPSGKGK HKPTCTCNVC LTVRRRFKTL MMRKKKRQSE REAENAQKDN NNHKDESEIN  840
GTSTEVGLHM NHSSENGGCQ SRIEADVAES STAGQIDLNC EPNPYVQSSG LTLLRLADAV  900
SQPLNNYMKE SCLANMMCEP QAGIGSSLLT QATDESERRL SNEGCLSAVA AWDCEGRGAA  960
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1539350513129DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1803814RRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241197.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLM5WJ890.0M5WJ89_PRUPE; Uncharacterized protein
STRINGGLYMA11G31234.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1